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Hana Abernath: Acute respiratory failure
ENC-00062 · 53M · Hospital Medicine · admitted Fri Oct 30, 2026 11:17 AM · discharged Tue Nov 03, 2026 01:25 PM · attending Dr. Isaac Abernath · resident Dr. Keira Upfield
Documented “hypoxemia” (R09.02); criteria support the more specific Acute respiratory failure with hypoxia (J96.01).
Documented vs supported
- Documented
- “hypoxemia” · R09.02 Hypoxemia
- Criteria support
- Acute respiratory failure with hypoxia · J96.01 Acute respiratory failure with hypoxia
- Outcome
- Hypoxaemia criterion met with a sign of respiratory distress
- Rule
- Acute hypoxic respiratory failure v2026.11-1
- Published source
- Merck Manual Professional Version: Acute Hypoxemic Respiratory Failure (AHRF), including ARDS (2026), Definition/evaluation: PaO2 <60 mmHg, PaO2/FiO2 <300, or SpO2 <88%, with dyspnea and tachypnea · source (checked 2026-11-14)
- Contested
- Organizations use different oxygen-saturation cut-offs (SpO2 <88%, <=90% or <91% on room air). This rule uses <88% (the source above) and a LOCAL respiratory-rate cut-off of 28/min as one sign of respiratory distress.
Effect if the clinician agrees (illustrative)
- Change
- R09.02 -> J96.01
- Secondary-diagnosis level
- non-CC → MCC
- MS-DRG (illustrative)
- 872 Septicemia or severe sepsis without MV >96 hours without MCC → 871 Septicemia or severe sepsis without MV >96 hours with MCC
- Relative weight
- 1.0233 → 1.9425 (+0.9192)
- Codes before
- A41.9, N39.0, E46, N18.9, N17.9, I50.9, R09.02, I10, E78.5, E11.9
- Codes after
- A41.9, N39.0, E46, N18.9, N17.9, I50.9, I10, E78.5, E11.9, J96.01
All open gaps on this encounter together: MS-DRG 872 → 871 (RW +0.9192).
CC/MCC status, CC exclusions (subset) and relative weights from the public CMS FY2026 IPPS final rule tables (5, 6I, 6J, 6K). This is not a grouper and not a payment estimate. Queries never mention any of this.
Severity documentation index change SIMULATED
1.0 points
SIMULATED: Illustrative severity weights (MCC = 1.0, CC = 0.5, non-CC = 0) summed over secondary diagnoses; not a validated risk-adjustment model and not a measured effect.
Evidence
Structured values are read by code from the cited rows. Note facts are shown only when the model's quote was found verbatim in the note.
| Input | Value | Source |
|---|---|---|
| Lowest SpO2 on room air (%) | 86.0 |
SpO2 86% on room air
|
| Lowest PaO2 on room air (mmHg) | 54.0 |
PaO2 54 mmHg on room air
|
| Lowest PaO2/FiO2 ratio PaO2 / FiO2 (room air FiO2 0.21 when none recorded) |
257 |
PaO2 54 mmHg
FiO2 21
|
| Highest respiratory rate (/min) | 32.0 |
respiratory rate 32/min
|
| Highest supplemental oxygen flow (L/min) | 6.0 |
O2 6 L/min (nasal cannula)
|
| Increased work of breathing quoted from a note | True |
“increased work of breathing”
Show the quote in the note… edical history: heart failure with reduced ejection fraction, hypertension, hyperlipidemia, type 2 diabetes.
Review of systems otherwise negative.
Exam: Lungs: increased work of breathing with accessory muscle use.
Assessment and plan:
1. Sepsis: antibiotics, fluids.
2. Urinary tract infection: antibiotics.
3. CKD: renally dose medications. |
Rule trace (inputs, thresholds, outcome)
| Step | Expression | Inputs and thresholds read | Result |
|---|---|---|---|
| derived: measured | present(spo2_min_ra) or present(pao2_min_ra) or present(pf_min) |
pao2_min_ra=54.0, pf_min=257, spo2_min_ra=86.0 | true |
| derived: hypoxemia | coalesce(spo2_min_ra < t.spo2_ra, false) or coalesce(pao2_min_ra < t.pao2, false) or coalesce(pf_min < t.pf, false) |
pao2_min_ra=54.0, pf_min=257, spo2_min_ra=86.0, t.pao2=60, t.pf=300, t.spo2_ra=88 | true |
| derived: distress | coalesce(rr_max >= t.rr_distress, false) or coalesce(wob_increased, false) or adv_resp_support |
adv_resp_support=False, rr_max=32.0, t.rr_distress=28, wob_increased=True | true |
| outcome: chronic_baseline | home_o2 and hypoxemia |
home_o2=False, hypoxemia=True | false |
| outcome: met | hypoxemia and distress |
distress=True, hypoxemia=True | true |
Documentation query
Title and question drafted by model clockworks-mock (audit entry #2088); clinical indicators and answer options assembled by code from the rule and the record.
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DOCUMENTATION QUERY (draft) Title: Clarification request: respiratory documentation Encounter: ENC-00062 Patient: Hana Abernath To: Dr. Isaac Abernath Clinical indicators from the health record: - Documented in the record: "hypoxemia" [Progress note DOC-000215] - SpO2 86% on room air (2026-10-30 11:37) [vital VIT-006025] - PaO2 54 mmHg on room air (2026-10-30 11:42) [lab LAB-002102] - FiO2 21 (2026-10-30 11:42) [lab LAB-002103] - respiratory rate 32/min (2026-10-30 11:37) [vital VIT-006026] - O2 6 L/min (nasal cannula) (2026-10-30 11:47) [vital VIT-006027] - "increased work of breathing" (2026-10-30 14:17) [History and physical DOC-000214, p. 1, line 8] Question: Based on your clinical judgement and the indicators above, can the respiratory diagnosis being evaluated and treated be further specified? Response options (select one or write your own): ( ) Acute respiratory failure with hypoxia ( ) Hypoxemia without respiratory failure ( ) Other (please specify): ____________ ( ) Unable to determine Please respond based on your independent clinical judgement. Any response, including "unable to determine", is acceptable. This query and your response are kept as part of the health record.
Other findings on this encounter
- Chronic kidney disease · Specificity gap Documented “CKD” (N18.9); criteria support the more specific Chronic kidney disease stage 3a (N18.31).
- Heart failure · Specificity gap Documented “congestive heart failure” (I50.9); criteria support the more specific Acute on chronic systolic (HFrEF) heart failure (I50.23).
- Malnutrition · Clinical validation gap Documented “malnourished” (E46) but the criteria are not met: 4 characteristics assessed and none met.
History
| Seq | When (UTC) | Actor | Action | Entities | Decision / reason | Model / hashes |
|---|---|---|---|---|---|---|
| 2088 | 2026-11-14T20:57:24 | system:llm system |
llm.call |
ENC-00062, ENC-00062.respiratory_failure | — | clockworks-mock mock-1/exactdx.draft_query@1 prompt f94cfa3b4fef output 5de8fced5850 entry d689e09a22e6 |
| 1262 | 2026-11-14T19:24:29 | system:llm system |
llm.call |
ENC-00062, ENC-00062.respiratory_failure | — | clockworks-mock mock-1/exactdx.draft_query@1 prompt f94cfa3b4fef output 5de8fced5850 entry 455bb2201143 |
| 520 | 2026-11-14T18:29:04 | system:llm system |
llm.call |
ENC-00062, ENC-00062.respiratory_failure | — | clockworks-mock mock-1/exactdx.draft_query@1 prompt f94cfa3b4fef output 5de8fced5850 entry c88c2887a34c |